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The Eaton-Shirley family papers consist of personal diaries, correspondence, military papers, legal and business documents, printed materials, and photographs. A primary figure in the collection, John Eaton, Jr., was Civil War Superintendent of the Freedmen and later Commissioner of Education under Grant. The papers also contains substantial material from other Eaton family members, including military papers and correspondence of his brother, Lucien B. Eaton, and papers of the Shirley family (the family of John Eaton, Jr.’s wife, Alice E. Shirley).

The Eaton papers consist of 1,903 items, dating from September 1790 to July 30, 1939. The bulk of the collection falls between 1850 and 1906. The papers contain 318 letters, 9 diaries/journals, 60 personal documents of John Eaton Jr., 275 legal documents and business papers, 112 military documents, 923 photographs, 84 printed items, and 122 miscellaneous items.

The majority of the correspondence is personal and relates to family matters. The 168 letters of John Eaton, Jr., contain extensive biographical information. Of particular interest are 44 Civil War-era letters including information about the freedmen, three letters pertaining to the publication of The Post, and two with content regarding the Ku Klux Klan. The collection also contains 22 letters to and from Alice (Shirley) Eaton, 31 letters to and from Lucien Eaton, and 32 miscellaneous letters from members of the Eaton family. Of the 30 letters written by Alice Eaton's parents (James and Adelaine Shirley), 10 letters regard compensation for the damage done to the Shirley House during the Civil War. Various other members of the Shirley family wrote 15 letters, and 20 letters are from other people unrelated to the Eaton and Shirley families.

John Eaton Jr.’s aunt, Ruth Dodge Eaton, wrote two diaries which consist almost entirely of Christian hymns and essays. John Eaton Jr.'s uncle, Horace Eaton, wrote one diary that contains Christian material written while he attended Dartmouth College. John Eaton, Jr., wrote two diaries, one of which he wrote as a youth, and the other as a student at Dartmouth. Other journals include two by John Eaton Jr.'s brothers, Frederick and Charles, and a household account book, kept by his sister Christina. Of particular importance is Alice Shirley’s diary, in which she described pre-civil war tensions between the north and the south, speculation on the upcoming Siege of Vicksburg, the early stages of the Siege of Vicksburg, and very personal feelings regarding her marriage to John Eaton, Jr.

The 60 personal papers of John Eaton Jr. include 17 documents regarding his appointments and titles, two documents about freedmen, and 41 miscellaneous address cards and invitations (including an invitation to the opening of the Brooklyn Bridge).

Of the 275 legal papers, 74 documents pertain to the sale of land in Mississippi; 7 concern Robert M. Jones’s claim to Choctaw Nation lands; and 25 relate to estate papers, deeds of trust and documents about the proceedings of Adelaine Shirley’s post-war relief claims; and a receipt for the sale of an African American woman. The remaining 176 legal papers are miscellaneous financial documents, such as tax documents, checks, and receipts.

Of the 112 military documents, 58 pertain to John Eaton, Jr., 7 of which are about freedmen. The military documents of Lucien B. Eaton number 54.

The 923 photographs consist of six photo albums, 31 cased daguerreotypes and ambrotypes, 144 cabinet cards, and 421 loose photographs and snapshots all depicting members of the Eaton and Shirley families, scenic locations, and the Shirley House.

Of the 84 printed items in the collection, 49 newspaper clippings pertain to the occupational and personal activities of John Eaton, Jr., and 9 miscellaneous clippings relate to the Eaton family. The remaining 26 items are published pamphlets, including addresses and reports concerning John Eaton, Jr.; a sermon written by Horace Eaton; a report of proceedings of an Ohio Brigade reunion; an Anti-Slavery Almanac from 1838; and an incomplete piece describing the history and restoration of the Shirley House.

The 122 miscellaneous papers of the John Eaton, Jr., collection consist of 53 recipes and 69 miscellaneous items including a partial autobiography of Alice Eaton.

The Sylvester Day collection (1813-1920) is made up of 17 letters and documents written by or related to Sylvester Day, a surgeon for the United States military during the War of 1812.

The Sylvester Day collection (1813-1920) is made up of 17 letters and documents written by or related to Sylvester Day, a surgeon for the United States military during the War of 1812, respecting Day's work, his son's education, and additional topics.

Day wrote to his son, Hannibal, praising his academic successes and urging him to continue working hard. Day wrote, "it affords me much pleasure to hear from you, and learn that you are assiduous in the prosecution of your studies … I have no doubt of your being qualified to enter college by next commencement" (October 17, 1817). In a second letter to Hannibal, Day wrote, "It affords me much satisfaction to hear of your good conduct and progress in your studies. I wish you to perfect yourself in the rudiments of arithmetic" (March 27, 1818).

Items pertaining to Day's claims against the United States for reparations reveal the surgeon's professional work ethic. The testimony of David Beard, a purveyor and resident of Detroit, provides insight into Day's dedication to his patients. Beard recalled that Day volunteered to stay in Detroit, even after its surrender to British troops, in order to "attend upon the sick and wounded American prisoners who were unable to be removed. These services were specially important at that time, as no other medical man of either army remained there" (January 6, 1835). The official memorial of Sylvester Day contains an account of Day's departure after the surrender of Detroit and his subsequent detainment and loss of property at the hands of his own countrymen. Day's attorney claimed, "the petitioner ordered on shore, but forbidden to take his baggage & effects which remained in the vessel, and was destroyed when she was burnt by order of Col. Schuyler" (undated).

Three manuscripts from the United States War Department outline milestone dates of Day's military career, along with the locations of specific postings and different positions he held over his lifetime. Also of note is an illustrated, partially printed document certifying Day's contribution of five dollars towards the building of the Washington Monument. This contribution entitled Day to "all the privileges of Membership in the Washington National Monument Society," and bears printed signatures of Zachary Taylor, Elisha Whittlesey, and George Watterston (July 12, 1850). The collection also contains a dinner invitation from Michigan's Governor Lewis Cass, as well as a request for medical aid or referral from General Alexander Macomb in regard to his wife.