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The Alexander Thompson papers consist of the papers of three generations of Thompsons: Captain Alexander Thompson (1759-1809), Colonel Alexander Ramsey Thompson (1793-1837), and Reverend Alexander Ramsey Thompson (1822-1895). These papers document the military service of Captain Thompson in United States army (1793-1809); Colonel Thompson's military service (1819-1837); attempts by Colonel Thompson's widow Mary Thompson to secure a military pension (1838-1849); and the career of Reverend Thompson, a Union Army chaplain and Presbyterian minister, along with his family letters (1850-1932).

The Alexander Thompson papers (653 items) consist of the papers of three generations of Thompsons: Captain Alexander Thompson (1759-1809), Colonel Alexander Ramsey Thompson (1793-1837), and Reverend Alexander Ramsey Thompson (1822-1895). The collection is comprised of 494 letters and documents, 1 diary, 25 photographs, 103 religious writings and hymns, and 30 items of printed material. These papers document the military service of Captain Thompson in the United States Army (1793-1809); Colonel Thompson's military service (1819-1837); attempts by Colonel Thompson's widow, Mary Thompson, to secure a military pension (1838-1849); and the career of Reverend Thompson, Union Army chaplain and Presbyterian minister, along with his family letters (1850-1932).

The Correspondence and Documents series (494 items) is made up of three subseries, one for each Alexander Thompson represented in the collection.

The Captain Alexander Thompson subseries (255 items) consists of letters and documents related to Thompson's army career, including 37 military records (pay rolls, musters, and accounts) and 14 provisional returns. The bulk of the letters are to and from the war office in Philadelphia and from fellow army officers. These provide administrative documentation for the fledgling American military, as well as specific details on Thompson's assignments at Governor's Island, West Point, Fort Niagara, and Detroit. Topics covered include his efforts to provision and pay his troops, fortify his outposts, and recruit soldiers.

• April 19, May 7 and 24, and June 20, 1795: Letters from Thompson to New York Governor George Clinton, concerning the French navy and the fort at Governor's Island
• July 9, 15, and 18, 1795: Letters between Colonel Louis de Tousard and Thompson concerning prisoners, troops, and musicians at Governor's Island
• December 5, 1795: Letter fromThompson to Alexander Hamilton concerning a lawsuit involving Thompson's professional conduct at Governor's Island
• March 29, 1796: Letter to Thompson warning of a mutiny on Governor's Island
• September 14, 1800: Letter from Thompson to John Jacob Ulrich Rivardi concerning small pox at Detroit
• February 17, 1801: Letter from Thompson to Major Moses Porter, concerning filling the United States officer corps with Americans instead of foreign commanders
• January 20, 1803: May 1 and August 24, 1807: Letters and bills to and from Thompson and Secretary of War Henry Dearborn concerning payments for travel
• October 15, 1804: Instructions from Thompson to Doctor Frances La Barons concerning trading for pelts at Michilimackinac
• September 1807: News from a friend in St. Louis describing army activities there

The Colonel Alexander R. Thompson subseries (137 items) documents his post-War of 1812 military career, and his wife's efforts to secure a pension after his death. These include letters from fellow officers and friends, a few retained copies of Thompson's letters, and 55 letters to and from Mary Thompson and various prominent government officials concerning military pensions. In many of Mary's letters she described episodes in her husband's military career, including wounds and sicknesses suffered while on duty.

• November 27, 1816: Captain Kearny at Sackets Harbor to Thompson concerning securing pay to Mrs. Niblock for washing clothes for the army
• January 12, 1817: Major W.J. Worth at Sackets Harbor to Thompson describing a celebration at the newly build Madison Barracks
• May 13, 1833: George Brooke at Fort Howard (Green Bay) to Thompson describing his journey across Lake Huron
• August 28, 1833: Benjamin F. Larneal to Thompson concerning shipping a piano to Michigan
• April 28, 1836: Thompson to his nephew Alexander Thompson, describing the encampment and fortifications at Camp Sabine, Louisiana, and the lawless state of Texas - "the country is consequently infested with robbers and pirates
• February 21, 1837: Mary Thompson to General Winfield Scott seeking a promotion for her sick husband
• March 6, 1840: Mary to her brother-in-law William Thompson, relating her difficulties securing a pension
• 1842-1845: Letters to and from Mary Thompson to New York Governor Hamilton Fish and members of the Senate and the House of Representatives, including John Jordan Crittenden and Thomas Hart Benton
• October 8, 1847: E. Backay at San Juan to Mary Thompson containing a description of the Mexican-American War
• March 13, 1853: Department of the Interior to Mary Thompson concerning her request for a land bounty

The Reverend Alexander R. Thompson subseries (102 items) contains Thompson's letters and 25 of his children's letters. Of note are the items documenting his Civil War service as chaplain of the 17th Regiment of Connecticut Volunteers and at the Roosevelt Hospital. These include many letters from solders and former parishioners serving throughout the country. Also present are letters discussing Thompson and his family's travels around New York and New England, and to the Canary Islands, Quebec, and San Francisco. The post-1872 letters largely concern Thompson's children.

• November 28, 1861: Albion Brooks to Thompson describing the soldier's Thanksgiving dinner at Burnside Camp, Annapolis, Maryland
• January 16, 1862: Leonard Woolsey Bacon to Thompson concerning chaplains' aids
• July 2, 1863: A small diagram of the Union fleet on the Mississippi River in front of Vicksburg
• June 4, 1864: Moses Smith of the 8th Connecticut Regiment to Thompson describing the battle at Cold Harbor
• September 25, 1865: E.A. Russell to Thompson describing hearing Julia Ward Howe's "Battle Hymn of the Republic" on board a steam ship: "I feel like after hearing it sung like one inspired for the work. I do think it is very near Gods work."
• September 27, 1865: Five verses of the "Battle Hymn of the Republic" copied on board the Steamship United States
• September 23, 1871: Gin Bon, secretary of the Chinese Young Men's Christian Society of San Francisco, to Thompson concerning his support of the group and enclosing four photographs of members

The Diary series (1 item, 372 pages) is the personal journal of Reverend Alexander Ramsey Thompson for 1861. The diary is deeply personal and includes Thompson's thoughts on personal, spiritual, and political matters, as well as his thoughts on the outbreak of the Civil War and his decision to join the army as a chaplain. In the back of the diary are 5 newspaper clippings concerning New York University commencements.

• April 13 and 16, 1861: Thoughts on the siege and bombardment at Fort Sumter
• July 22 and 24, 1861: Thoughts on First Bull Run
• August 31, 1861: Discussion of seeing a hippopotamus at Barnum's Museum

The Photographs series (25 items) contains undated family pictures, images of houses and landscapes, and commercial photographs of buildings in Europe.

Four additional photographs are located with the letter of September 23, 1871. These are portraits of Chinese Americans, one taken by Chinese photographer Lai Yong of San Francisco, and one of letter writer Gin Bon, secretary of the Chinese Young Men's Christian Society. Gin Bon's portrait contains watercolored highlights. The hymn book for the Roosevelt Hospital in the Printed Materials series contains family photographs, including a group picture in which many of the sitters are holding tennis rackets.

The Religious Writings series is composed of two subseries: Sermons and Ecclesiastical History Notes, and Hymns. Though largely undated and unattributed, these writings were all likely created by Reverend Thompson. The Sermons and Ecclesiastical History notes subseries (61 items) contains 58 sermon notes that Thompson wrote in the 1890s, much of which was written on Roosevelt Hospital stationery. Some of these are outlines while others are fully formed sermons. He also wrote notes on ecclesiastical history in two notebooks dated 1881 (232 pages), and on the Hebrew language in an undated notebook (58 pages). The Hymns subseries (42 items) contains 9 manuscript hymns, 16 printed hymns, and 17 volumes of manuscript hymns. They consist of transcribed and translated hymns, Bible quotations, and ballad lyrics. Two of the printed hymns, both Christmas carols, include music for four voices.

The Printed Material series (30 items) is comprised of 18 newspaper clippings and 12 miscellaneous printed items. The newspaper clippings are an essay by Reverend Thompson entitled "The Burial of Moses," and an address from Thompson delivered at the unveiling of a Gettysburg monument for the 17th Connecticut Volunteers. The Miscellaneous Printed Items subseries contains 12 items, including ephemera related to New York University commencements; an engraving of author, nurse, and charity organizer Isabella Graham; an annual report for the Brooklyn Nursery (1888); and a Roosevelt Hospital hymnal in which someone has inserted photograph clippings of Reverend Thompson, his wife, and others.

The James McHenry papers contain correspondence and documents related to the political career of James McHenry. The majority of the materials pertain to his tenure as Secretary of War from 1796 to 1800. In addition to this finding aid, the Clements Library has created a full list of letter-writers in the James McHenry papers: James McHenry Contributor List.

The James McHenry papers contain over 800 items related the life and career of James McHenry. Included in the materials are approximately 670 letters and 106 documents, primarily related to McHenry's political career, as well as financial records and miscellaneous documents, including poetry and genealogical materials. The majority of the correspondence and documents are drafts or retained manuscript copies.

The Correspondence and Documents series spans 1777-1832, with the bulk of materials concentrated around 1796 to 1803. The first box of the collection contains documents and correspondence related to McHenry's service in the Revolutionary War, including correspondence with Sir Henry Clinton, George Washington, and Alexander Hamilton. The materials include a draft of a letter to British general Henry Clinton regarding his military failures, written in McHenry's hand but signed "Z" (October 26, 1779), as well as a copy of a letter allegedly written by Clinton to Lord George Germain, which McHenry sent to Samuel Louden of the New York Packet to be published (March 24, 1780). The postwar materials in the collection pertain to McHenry's tenure as a Maryland statesman. Along with documents related to McHenry's political career during those years is a letter dated August 13, 1794, which relates news of the massacre of French colonists at Fort Dauphin in Saint-Domingue (now Haiti), led by Jean-François, an important figure in the Haitian Revolution.

The bulk of the collection, representing 1796 to 1803, documents McHenry's tenure as secretary of war under presidents Washington and Adams. The correspondence and documents relate to military structures, provisions, international relations, treaties, politics, and relations with Native American tribes. The collection contains frequent correspondence with other cabinet members and politicians, including Secretary of State Timothy Pickering and Secretary of the Treasury Oliver Wolcott as well as President George Washington, John Adams, and the Marquis de Lafayette. McHenry served as secretary of war during the Quasi-War with France and, as a staunch Federalist, favored positive relations with Britain over France. A large portion of the correspondence during this period relates to the ongoing feud with that country. A letter from James Winchester to McHenry describes the suspicion with which the Federalists regarded Jeffersonian Democratic-Republicans, who favored closer relations with France: "…tho' they will not openly shew at this time their predilection for France, they will discover it in the first calamitous event which may happen to our Country. Depend on it they are not to be trusted. I speak of the party here" (April 18, 1789). Several months later McHenry wrote in an unaddressed letter draft that he believed the President should recommend a declaration of war with France to Congress. He also expressed his concerns over "a faction within the country constantly on the watch and ready to seize upon every act of the Executive which may be converted into an engine to disaffect the people to the government" (November 25, 1798).

In addition to national and international politics, many of the items relate to U.S. relations with Native American tribes, including the Creek, Chickasaw, and Miami. The materials frequently concern attempts to maintain peace and create treaties with the tribes, as well as to prevent them from giving their loyalty to other countries, such as Britain, France, or Spain. Box 2 contains a copy of a "Talk of the Chickasaw Chiefs at the Bluffs represented by Wolf's Friend, Ugalayacabé" regarding the tribe's concerns about the Americans: "Tell me if I may return to my Nation to appease the tumult of their minds. Shall I tell them the talk of the Americans is falsehood? Shall I assure our warriors our children and our women that your flag will always wave over our land, or tell them to prepare to die?" [1797]. This box also contains a small series of letters from General Anthony Wayne, written from his headquarters in Detroit, where he was stationed before his death, after successfully leading U.S. troops in the Northwest Indian War (August 29 to October 3, 1796). After the war, Miami Chief Little Turtle, became a proponent of friendly relations with the Americans. McHenry wrote to him upon his resignation as secretary of war, thanking him for his friendship: "…I shall carry with me the remembrance of your fidelity, your good sense, your honest regard for your own people, your sensibility and eloquent discourse in their favour, and what is precious to me as an individual, a belief that I shall always retain your friendship" (May 30, 1800). Other documents include an extract of a letter from Major Thomas Cushing to Brigadier General James Wilkinson, writing that he had given gifts to the Native Americans in order to prevent them from siding with the Spanish at New Orleans, who were attempting to win their favor (February 15, 1800).

Boxes 6 through 8 contain correspondence and documents written after McHenry's resignation as secretary of war at the end of May 1800. Though he retired from politics, his letters document that he maintained a keen interest in domestic and international issues. Senator Uriah Tracy wrote regular letters to McHenry in February 1801, keeping him up-to-date on the daily events regarding the presidential election between Thomas Jefferson and Aaron Burr. After the election, McHenry wrote a letter to U.S. Ambassador to the Netherlands William Vans Murray, in which he discussed the election and why public opinion had shifted from the Federalists to Jefferson: "I still am of opinion, that we should have gained nothing by the election of Mr. Burr, could it have been accomplished by federal means. The general sentiment is so strong and ardent for Mr. Jefferson, that experience alone can correct it" (February 23, 1801). This section of correspondence also contains a draft of a letter to the speaker of the House of Representatives containing McHenry's defense against charges brought against him regarding disbursements while secretary of war (December 22, 1802), as well as his opinions of current political happenings, including the Louisiana Purchase in 1803, and the Embargo Act of 1807. Several of the letters written during this period also relate to McHenry's low opinion of John Adams, who forced him out of office. In a series of letters exchanged by McHenry and Oliver Wolcott in 1800, McHenry described his anger regarding Adams, and expressed regret that Adams remained in office after George Washington left. Over ten years later, McHenry wrote a letter to Timothy Pickering, responding to a series of memoirs Adams had printed in the Boston Patriot . He accused Adams of making significant errors and misrepresentations, and mused, "How many recollections have these puerile letters awakened. Still in his own opinion, the greatest man of the age. I see he will carry with him to the grave, his vanity, his weaknesses and follies, specimens of which we have so often witnessed and always endeavored to veil from the public" (February 23, 1811).

The Bound Items series consists of a diary, a published book of letters, a book of U.S. Army regulations, an account book, and a book of poetry. McHenry kept the diary from June 18 to July 24, 1778, beginning it at Valley Forge. It contains accounts of daily events, intelligence, orders, the Battle of Monmouth, and the march of Washington's army to White Plains, New York. The 1931 book, entitled Letters of James McHenry to Governor Thomas Sim Lee is the correspondence written by James McHenry to Maryland governor Thomas Sim Lee during the 1781 Yorktown Campaign. The book of army regulations spans ca. 1797-1798, while the account book covers 1816-1824. The book of poetry is handwritten but undated and unsigned.

In addition to this finding aid, the Clements Library has created a full list of letter-writers in the James McHenry papers: James McHenry Contributor List.